For data analysis and visualization, I predominantly use the R computing language. Here are some links to get started with R and see some applications to oceanographic data analysis. Most image processing code I have written in ImageJ, a freeware developed by the U.S. National Institutes of Health. I am in the process of converting code from my research into R packages and creating a GitHub page. In the meantime, some of the image processing code I have written is available on ResearchGate.
New and useful R packages: dplyr and tidyr
ImageJ is implemented in Java, but it has a built-in macro language that is extremely useful for automating image processing tasks.
Stunning and informative videos about plankton at Plankton Chronicles
Visit the CONCORDE Biology sub-group page
Identify ISIIS images on the Plankton Portal
Identify plankton images from the UVP5
Online companion to Zooplankton of the Atlantic and Gulf Coasts
University of Southern Mississippi
Visit the Fisheries Oceanography page (Dr. Frank Hernandez)
Former Lab Groups
Oregon State University Plankton Ecology Lab (formerly at the University of Miami)